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52. 1. A. Kumar, P.L. Thotakura, Basant K Tiwary and Ramadas Krishna , Target identification in Fusobacterium nucleatum by subtractive genomics approach and enrichment analysis of host-pathogen protein-protein interactions, , BMC microbiology, 2016, 16, 84
53. Veena, V. K.; Kennedy, K.; Lakshmi, P.; Krishna, R.; Sakthivel, N, Anti-leukemic, anti-lung, and anti-breast cancer potential of the microbial polyketide 2, 4-diacetylphloroglucinol (DAPG) and its interaction with the metastatic proteins than the antiapoptotic Bcl-2 proteins, , Molecular and cellular biochemistry, 2016, 414 (1-2), 47-56
56. Arya, H.; Coumar, M. S.,, Virtual screening of traditional Chinese medicine (TCM) database: identification of fragment-like lead molecules for filariasis target asparaginyl-tRNA synthetase, Journal of Molecular Modelling, , 2016, 20 (6), 2266;
57. Sharma, O. P.; Kumar, M. S, Essential proteins and possible therapeutic targets of Wolbachia endosymbiont and development of FiloBase-a comprehensive drug target database for Lymphatic filariasis, , Scientific reports, 2016, 6, 19842
58. , Evolution of the SRGAP2 Gene Is Linked to Intelligence in Mammals., , Biomed Hub S.Karger AG,Basel, 2016, 1:1-12 (DOI: 10.1159/000443947)
59. Kumaravel Mohankumar, Sankar Pajaniradje, Subhashree Sridharan, Vivek Kumar Singh, Larance Ronsard, Akhil C Banerjea, Chellakkan S Benson, Mohane Selvaraj Coumar, Latha Periyasamy, Rajagopalan Rukkumani, MOLECULAR MECHANISM OF APOPTOTIC INDUCTION BY AN ANALOG OF CURCUMIN, BDMC-A IN HUMAN LARYNGEAL CARCINOMA CELL LINE (HEP-2) THROUGH EXTRINSIC AND INTRINSIC PATHWAYS IN COMPARISON WITH CURCUMIN: AN IN VITRO - IN SILICO STUDY, , Cell Oncology, 2016, 37,439-454
60. Mohankumar, K.; Sridharan, S.; Pajaniradje, S.; Singh, V. K.; Ronsard, L.; Banerjea, A. C.; Somasundaram, D. B.; Coumar, M. S.; Periyasamy, L.; Rajagopalan, R.,, BDMC-A, an analog of curcumin, inhibits markers of invasion, angiogenesis, and metastasis in breast cancer cells via NF-?B pathway-A comparative study with curcumin, , Biomedicine & Pharmacotherapy, 2016, 74, 178-186;
61. Subhomoi Borkotoky, Chetan Kumar Meena, and Ayaluru Murali, Interaction Analysis of T7RNA Polymerase with Heparin and its Low Molecular Weight Derivatives – An in silico Approach, , Bioinformatics and Biology Insights , 2016, 10: 155-166. doi : 10.4137/BBI.S40427
62. Muthu, K.; Panneerselvam, M.; Topno, N. S.; Ramadas, K., Structural transition of ETS1 from an auto-inhibited to functional state upon association with the p16INK4a native and mutated promoter region, , RSC Advances, 2016, 6 (19), 15960-15975
63. Devi, R. V.; Sathya, S. S.; Coumar, M. S.,, Evolutionary algorithms for de novo drug design - A survey, , Applied Soft Computing Journal, 2016, 27, 543-552;
65. Ikrormi R.; Amutha R, Insights into the structural dynamics of Liver kinase B1 (LKB1) by the binding of STe20 Related Adaptera (STRADa) and Mouse protein 25a (MO25a) co-activators, , Journal of Biomolecular Structure and Dynamics, 2016, Jul 8:1-15
66. Longkumer T, Kamireddy S, Muthyala VR, Akbarpasha S, Pitchika GK, Kodetham G, Murali A, Siddavattam D, Acinetobacter phage genome is similar to Sphinx 2.36, the circular DNA copurified with TSE infected particles, , Sci Reports, 2016, 3: ID 2240.
67. Sangeetha, B.; Muthukumaran, R.; Amutha, R., structural dynamics of native and V260E mutant C-terminal domain of HIV-1 integrase, Journal of Computer-Aided Molecular Design, , 2016, 29 (4), 371-385;
68. Chinta, G.; Ramya Chandar Charles, M.; Klopcic, I.; Sollner Dolenc, M.; Periyasamy, L.; Selvaraj Coumar, M.,, In Silico and in Vitro Investigation of the Piperines Male Contraceptive Effect: Docking and Molecular Dynamics Simulation Studies in Androgen-Binding Protein and Androgen Receptor, , Planta medica, 2016, 81 (10), 804-812;
69. Sarvagalla, S.; Cheung, C.H.A.; Tsai, J.Y.; Hsieh, H.P.; Coumar, M.S.,, Disruption of protein-protein interactions: hot spot detection, structure-based virtual screening and in vitro testing for the anti-cancer drug target - survivin, , Royal Society Of Chemistry, 2016, 6, 31947-31959
70. Syed, S. B.; Coumar, M. S.,, P-Glycoprotein Mediated Multidrug Resistance Reversal by Phytochemicals: A Review of SAR & Future Perspective for Drug Design, , Current topics in medicinal chemistry, 2016, 6, 2484-2508
71. Vishwambhar V.B.; Amutha R., Identification of Potent siRNA Molecules for TDP43 Mutants causing Amyotrophic lateral Sclerosis: a computational study, Computational Biology and Chemistry, , 2016, 61, 97–108.
72. Hsing-Pang Hsieh, Mohane Selvaraj Coumar, Tsu-An Hsu, Wen-Hsing Lin, Yi-Rong Chen and Yu-Sheng Chao, USED BICYCLIC AND TRICYCLIC PYRIMIDINE COMPOUNDS AS TYROSINE KINASE INHIBITORS, , , 2016, US8507502B2
73. Sailu Sarvagalla, Chun Hei Antonio Cheung, Ju-Ya Tsai, Hsing Pang Hsieh and Mohane Selvaraj Coumar*, DISRUPTION OF PROTEIN�PROTEIN INTERACTIONS: HOT SPOT DETECTION, STRUCTURE-BASED VIRTUAL SCREENING AND IN VITRO TESTING FOR THE ANTI-CANCER DRUG TARGET - SURVIVIN, , Royal Society Of Chemistry, 2016, 6, 31947-31959
74. Vishwambhar V. B.; Amutha R., Structural dynamics of human Argonaute2 and its interaction with siRNAs designed to target mutant tdp43, Advances in Bioinformatics, , 2016, http://dx.doi.org/10.1155/2016/8792814
75. Hsing-Pang Hsieh, Mohane Selvaraj Coumar, John T.-A. Hsu, Su-Ying Wu and Yu-Sheng Chao, FUSED BICYCLIC PYRIMIDINE COMPOUNDS AS AURORA KINASE INHIBITORS, , , 2016, US8138194B2
76. Dinakar R. Ampasala, M. Pritika, Mohane Selvaraj Coumar and Amouda Venkatsan, MINING PLUTELLA XYLOSTELLA EXPRESSED SEQUENCE TAGS (EST) FOR A FUNCTIONALLY ANNOTATED CANDIDATE GENE INDEX, , Indian journal of Agricultural Research, 2016, 50 (1), 33-38
77. Dinakar R. Ampasala, M. Pritika, Mohane Selvaraj Coumar and Amouda Venkatsan, Mining Plutella Xylostella?S Expressed Sequence Tags (Est) For A Functionally Annotated Candidate Gene Index, Indian Journal of Plant Physiology, Indian J. Agric. Res., 2016, 50 (1), 33-38
78. Hsing-Pang Hsieh, Mohane Selvaraj Coumar and Yu-Sheng Chao, FUSED MULTICYCLIC COMPOUNDS AS PROTEIN KINASE INHIBITORS, , , 2016, EP2331530B1
81. Meena C.K.; Borkotoky, S.; Murali, A., Insight into virus encapsulation mechanism through in silico interaction study between coat protein and RNA operator loops of Sesbania mosaic virus, , Molecular Biosystems, 2016, DOI: 10.1039/C6MB00206D.
82. Surampudi Durga Karteek, I. V. Kasi Viswanath, Mandava V. Basaveswara Rao, Sapam Tuleshwori Devi , Design, synthesis and docking study of novel coumarin based 1,3-oxazine derivatives as probable anti-cancer drugs., , Der Pharma Chemica, 2016, 8(15):46-60
83. Gopu, V.; Meena, C. K.; Murali, A.; Shetty, P. H., Quorum quenching activity in the cell-free lysate of Enterobacter ludwigii isolated from beef and its effect on quorum sensing regulation in Yersinia enterocolitica, , RSC Advances, 2016, 6 (25), 21277-21284;
84. Ampasala, D.R.; Pritika, M.; Coumar, M.S.; Venkatsan, A., Mining plutella xylostellas expressed sequence tags (EST) for a functionally annotated candidate gene index., , Indian Journal of Agricultural Research, 2016, 50 (1), 33-38
86. Raveendra Aanangi., Kasi Viswanath Kotapati., Bhagath Kumar Palaka., Thyagaraju Kedam., Nirmala Devi Kanika., Purification and characterization of lipoxygenase from mung bean (Vigna radiata L.) germinating seedlings, , 3 Biotech , 2016, 6:113 DOI 10.1007/s13205-016-0427-5
87. Gopu, V.; Meena, C. K.; Murali, A.; Shetty, P. H., Petunidin as a competitive inhibitor of acylated homoserine lactones in Klebsiella pneumoniae, , RSC Advances, 2016, 6 (4), 2592-2601.
88. P, B. K.; K, K. V.; S, T. D.; R, S. K.; Doucet, D.; Retnakaran, A.; Krell, P. J.; Feng, Q.; Ampasala, D. R., , Molecular cloning and structural characterization of Ecdysis Triggering Hormone from Choristoneura fumiferana, , International journal of biological macromolecules, 2016, 88, 213-221
89. Pan, A.; Lahiri, C.; Rajendiran, A.; Shanmugham, B, Computational analysis of protein interaction networks for infectious diseases, Briefings in Bioinformatics, , 2015, 1,10.
90. Suyavaran, A.; Ramamurthy, C.; Mareeswaran, R.; Shanthi, Y. V.; Selvakumar, J.; Mangalaraj, S.; Kumar, M. S.; Ramanathan, C. R.; Thirunavukkarasu, C, Synthesis and biological evaluation of isoindoloisoquinolinone, pyroloisoquinolinone and benzoquinazolinone derivatives as poly(ADP-ribose) polymerase-1 inhibitors, , Bioorganic & medicinal chemistry, 2015, 23 (3), 488-98;
91. Chikhale, R.; Thorat, S.; Pan, A.; Jadhav, A.; Thatipamula, K. C.; Bansode, R.; Bhargavi, G.; Karodia, N.; Rajasekharan, M. V.; Paradkar, A.; Khedekar, P., Design, synthesis and pharmacological evaluation of pyrimidobenzothiazole-3-carboxylate derivatives as selective L-type calcium channel blockers, , Bioorganic & medicinal chemistry, 2015, 23 (20), 6689-713
92. Shaik, J. B.; Palaka, B. K.; Penumala, M.; Kotapati, K. V.; Devineni, S. R.; Eadlapalli, S.; Darla, M. M.; Ampasala, D. R.; Vadde, R.; Amooru, G. D.,, Synthesis, pharmacological assessment, molecular modeling and in silico studies of fused tricyclic coumarin derivatives as a new family of multifunctional anti-Alzheimer agents, European journal of medicinal chemistry, , 2015, 107, 219-232
93. Kotapati, K. V.; Palaka, B. K.; Anangi, R.; Kedam, T.; Ampasala, D. R.,, Cloning and characterization of lipoxygenase gene from germinating seedlings of green gram (Vigna radiata L.), Indian Journal of Plant Physiology, , 2015, 20 (4), 345-352
94. Subhomoi Borkotoky, Chetan Kumar Meena, Aswathy Soman, Ayaluru Murali , Insight into the LGP2 Helicase Domain – An in Silico Approach, , Intl J Biochem Biophy, 2015, 3:13-23
95. Lakshmi, P. T.; Priyanka, D.; Annamalai, A, Reduction of Silver Ions by Cell Free Extracts of Westiellopsis sp., , International journal of biomaterials , 2015, 539494
96. Singh, V.; Borkotoky, S.; Murali, A.; Rao, J. L.; Rao, T. K.; Dhoble, S. J.,, Electron paramagnetic resonance and photoluminescence investigation on ultraviolet-emitting gadolinium-ion-doped CaAl(1)(2)O(1)(9) phosphors. Spectrochimica acta, , Part A, Molecular and biomolecular spectroscopy, 2015, 139, 1-6;
97. Nivedita R.; Amutha R., Temperature dependent dynamics of DegP-trimer: a molecular dynamics study, Computational and Structural Biotechnology Journal, , 2015, 13, 329–338.
98. Shakya, G.; Balasubramanian, S.; Rajagopalan, R.Amutha, Methanol extract of wheatgrass induces G1 cell cycle arrest in a p53-dependent manner and down regulates the expression of cyclin D1 in human laryngeal cancer cells-an in vitro and in silico approach, , Pharmacognosy magazine, 2015, 11 (Suppl 1), S139-47
100. Jaiswal, A.; Lakshmi, P. T. V, Molecular inhibition of telomerase recruitment using designer peptides: An in silico approach, , Journal of Biomolecular Structure and Dynamics, 2015, 33 (7), 1442-1459

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