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101. Panneerselvam, M.; Muthu, K.; Ramadas, K, Structural insights into tumor-specific chaperoning activity of gamma synuclein in protecting estrogen receptor alpha 36 and its role in tamoxifen resistance in breast cancer, , Molecular bioSystems, 2015, 11 (11), 2998-3010
102. Sharma, O. P.; Hari Krishna, K.; Suresh Kumar, M., Probing the Structural and Conformational Stability of the Wb-iPGM Enzyme and Role of Mn2+ Ions in Their Catalytic Site, , International Journal of Peptide Research and Therapeutics , 2015, 21 (4), 393-402;
103. Yi-Yu Ke, Vivek Kumar Singh, Mohane Selvaraj Coumar, Yung Chang Hsu, WenChieh Wang, Jen-Shin Song, Chun-Hwa Chen, Wen-Hsing Lin, Szu-Huei Wu, John T. A. Hsu, Chuan Shih & Hsing-Pang Hsieh., HOMOLOGY MODELING OF DFG-in FMS-LIKE TYROSINE KINASE (FLT3) AND STRUCTURE-BASED VIRTUAL SCREENING FOR INHIBITOR IDENTIFICATION, , Scientific Reports, 2015, 5:11702.
104. Preedia Babu, E.; Subastri, A.; Suyavaran, A.; Lokeshwara Rao, P.; Suresh Kumar, M.; Jeevaratnam, K.; Thirunavukkarasu, C., Extracellularly synthesized ZnO nanoparticles interact with DNA and augment gamma radiation induced DNA damage through reactive oxygen species, , RSC Advances, 2015, 5 (76), 62067-62077.
105. Gopichand Chinta, Mariasoosai Ramya Chandar Charles, Ivana Klopcic, Marija Sollner Dolenc, Latha Periyasamy,* and Mohane Selvaraj Coumar*, IN SILICO AND IN VITRO INVESTIGATION OF THE PIPERINE'S MALE CONTRACEPTIVE EFFECT: DOCKING AND MOLECULAR DYNAMICS SIMULATION STUDIES IN ANDROGEN BINDING PROTEIN AND ANDROGEN RECEPTOR, , Planta medica, 2015, 81,804-12.
106. Liang, W.; Miao, S.; Zhang, B.; He, S.; Shou, C.; Manivel, P.; Krishna, R.; Chen, Y.; Shi, Y. E, Synuclein ? protects Akt and mTOR and renders tumor resistance to Hsp90 disruption, , Oncogene, 2015, 34 (18), 2398-2405
107. Sailu Sarvagalla, Vivek Kumar Singh, Yi-Yu Ke, Hui-Yi Shiao, Wen-Hsing Lin, Hsing-Pang Hsieh, John T. A. Hsu, and Mohane Selvaraj Coumar*, IDENTIFICATION OF LIGAND EFFICIENT, FRAGMENT-LIKE HITS FROM AN HTS LIBRARY: STRUCTURE-BASED VIRTUAL SCREENING AND DOCKING INVESTIGATIONS OF 2H- AND 3H-PYRAZOLO TAUTOMERS FOR AURORA KINASE A SELECTIVITY, Journal of Computer-Aided Molecular Design, , 2015, 29,89-100
108. Kennedy, R. K.; Veena, V.; Naik, P. R.; Lakshmi, P.; Krishna, R.; Sudharani, S.; Sakthivel, N., Phenazine-1-carboxamide (PCN) from Pseudomonas sp. strain PUP6 selectively induced apoptosis in lung (A549) and breast (MDA MB-231) cancer cells by inhibition of antiapoptotic Bcl-2 family proteins, , Apoptosis : an international journal on programmed cell death , 2015, 20 (6), 858-868
109. Sangeetha, B.; Muthukumaran, R.; Amutha, R., Structural dynamics of native and V260E mutant C-terminal domain of HIV-1 integrase., Journal of Computer-Aided Molecular Design, , 2015, 29 (4), 371-85;
110. Devi, S. T.; Tandon, H.; Ampasala, D. R., , Identification of potent bromodomain4 (BRD4) inhibitors by energypharmacophore based virtual screening to target BRD4-NUT midline carcinoma, International Journal of Pharmacy and Pharmaceutical Sciences, , 2015, 7 (4), 77-84
111. Venkatesan, A.; Kuppusamy, D.; Gopal, J.; Gasva, K, Interface for protein structure prediction using self-organizing genetic algorithm, , International Journal of Applied Engineering Research, 2015, 10 (14), 34720-34725
112. Saravanan, V.; Lakshmi, P. T. V, ACPP: A web server for prediction and design of anti-cancer peptides, , International Journal of Peptide Research and Therapeutics, 2015, 21(1),99-106
113. Kennedy, R. K.; Naik, P. R.; Veena, V.; Lakshmi, B. S.; Lakshmi, P.; Krishna, R.; Sakthivel, N, 5-Methyl phenazine-1-carboxylic acid: a novel bioactive metabolite by a rhizosphere soil bacterium that exhibits potent antimicrobial and anticancer activities, , Chemico-biological interactions, 2015, 231, 71-82
114. Sapam Tuleshwori Devi, Anushree Dutta, Bhagath Kumar Palaka, MohdBabu Khan, Kasi Viswanath, Identification and Validation of CCR5 Antagonists from Maraviroc Analogs by PharmacophoreModelling and 3D-QSAR Studies, , Current Drug Therapy, 2015, 9(3), 188-198
116. Rai, N.; Ramaswamy, A., Temperature dependent dynamics of DegP-trimer: A molecular dynamics study, Computational and Structural Biotechnology Journal, , 2015, 13, 329-38;
117. Manas Ranjan Barik, Insilico identification and analysis of spo0A as drug target in Clostridium difficile., , Journal of Chemical and Pharmaceutical Research , 2015, 7(3):2069-2079
118. Rani, N.; Saravanan, V.; V, L. P.; Arunachalam, A, Allosteric site mediated active site inhibition of PBP2a using Quercetin 3-O-Rutinoside and its combination, , Journal of biomolecular structure & dynamics, 2015, 1-35
119. Muthukumaran, R.; Sangeetha, B.; Amutha, R., conformational analysis on the wild type and mutated forms of human ORF1p: a molecular dynamics study, , Molecular Biosystems, 2015, 11 (7), 1987-99;
120. Lakshmi, P. T.; Priyanka, D.; Annamalai, A, Reduction of Silver Ions by Cell Free Extracts of Westiellopsis sp., , International journal of biomaterials , 2015, 539494
121. Singh, V.; Borkotoky, S.; Murali, A.; Rao, J. L.; Rao, T. K.; Dhoble, S. J.,, Electron paramagnetic resonance and photoluminescence investigation on ultraviolet-emitting gadolinium-ion-doped CaAl(1)(2)O(1)(9) phosphors. Spectrochimica acta, , Part A, Molecular and biomolecular spectroscopy, 2015, 139, 1-6;
122. Nivedita R.; Amutha R., Temperature dependent dynamics of DegP-trimer: a molecular dynamics study, Computational and Structural Biotechnology Journal, , 2015, 13, 329–338.
123. Shakya, G.; Balasubramanian, S.; Rajagopalan, R.Amutha, Methanol extract of wheatgrass induces G1 cell cycle arrest in a p53-dependent manner and down regulates the expression of cyclin D1 in human laryngeal cancer cells-an in vitro and in silico approach, , Pharmacognosy magazine, 2015, 11 (Suppl 1), S139-47
125. Jaiswal, A.; Lakshmi, P. T. V, Molecular inhibition of telomerase recruitment using designer peptides: An in silico approach, , Journal of Biomolecular Structure and Dynamics, 2015, 33 (7), 1442-1459
126. Saravanan, V.; Dualpred, A webserver for predicting plant proteins dual-targeted to chloroplast and mitochondria using split protein-relatedness-measure feature, Current Bioinformatics, , 2015, 10 (3), 323-331
127. , Next-generation sequencing and assembly of plant genomes., , PlantOmics: The Omics of Plant Science. (Editors: Barh D., Khan, M.S., Davies E.), 2015, Pages 53-64, Springer
128. Topno, N. S.; Kannan, M.; Krishna, R, Interacting mechanism of ID3 HLH domain towards E2A/E12 transcription factor - An Insight through molecular dynamics and docking approach, , Biochemistry and Biophysics Reports, 2015, 5, 180-190
129. Sarvagalla, S.; Singh, V. K.; Ke, Y. Y.; Shiao, H. Y.; Lin, W. H.; Hsieh, H. P.; Hsu, J. T. A.; Coumar, M. S.,, Identification of ligand efficient, fragment-like hits from an HTS library: Structure-based virtual screening and docking investigations of 2H- and 3H-pyrazolo tautomers for Aurora kinase A selectivity, Journal of Computer-Aided Molecular Design, , 2015, 29 (1), 89-100
130. S. Datta, S. Sarkar, S. Chakraborty, S. K. Mulpuru, S. Basu, Basant K. Tiwary, N. Chakrabarti & P. K. Roy, MRI characterization of temporal lobe epilepsy using rapidly measurable spatial indices with hemisphere asymmetries and gender features. Neuroradiology, Springer, , 2015, 57:873-86
131. Sarvagalla, S.; Coumar, M. S.,, Structural Biology Insight for the Design of Sub-type Selective Aurora Kinase Inhibitors, , current cancer drug targets, 2015, 15 (5), 375-93;
132. Ke, Y. Y.; Singh, V. K.; Coumar, M. S.; Hsu, Y. C.; Wang, W. C.; Song, J. S.; Chen, C. H.; Lin, W. H.; Wu, S. H.; Hsu, J. T.; Shih, C.; Hsieh, H. P., Homology modeling of DFG-in FMS-like tyrosine kinase 3 (FLT3) and structure-based virtual screening for inhibitor identification, , Scientific Reports, 2015, 5, 11702;
133. Archana Pan, Chandrajit Lahiri, Anjana Rajendiran, Buvaneswari Shanmugham, Computational analysis of protein interaction networks for infectious diseases, , Brief Bioinform, 2015, pii: bbv059
135. Devi, R.V.; Sathya, S.S.; Coumar, M.S., Devi, R.V.; Sathya, S.S.; Coumar, M.S., , Journal of Soft Computing Enginerring, 2014, 4 (2), 92-96.
136. Jadhav, A.; Shanmugham, B.; Rajendiran, A.; Pan, A, Unraveling novel broad-spectrum antibacterial targets in food and waterborne pathogens using comparative genomics and protein interaction network analysis, , Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases , 2014, 27, 300-8
137. Ezhilarasan, V.; Jadhav, A.; Pan, A, Screening of potent antibacterial agents targeting Clostridium difficile virulence factor toxin B: An in silico approach, , Medicinal Chemistry Research, 2014, 23 (10), 4464-4481
138. Ankush Jadav, Buvaneswari Shanmugham, Anjana Rajendiran, Archana Pan, Unraveling novel broad-spectrum antibacterial targets in food and waterborne pathogens using comparative genomics and protein interaction network analysis, , Infect Genet Evol, 2014, Vol. 27, 300-308
139. Lakshmi P.T.V, Sathya Priya and Annamalai A , Detection and Comparative Analysis of Uber-operons of FabZ gene Responsible for Fatty Acid Biosynthesis in Nostoc Punctiforme Cyanobacterium, , Research & Reviews: A Journal of Bioinformatics, 2014, 1(1): 36-45
140. Vijayalakshmi Ezhilarasan, Ankush Jadav, Archana Pan,, Screening of potent antibacterial agents targeting Clostridium difficile virulence factor toxin B: An in silico approach, , Med Chem Res, 2014, DOI 10.1007/s00044-014-1017-x
141. Saravanan, V.; Lakshmi, P. T. V, Dualpred: A Webserver For Predicting Plant Proteins Dual-Targeted To Chloroplast And Mitochondria Using Split Protein-Relatedness-Measure Feature., Current Bioinformatics, , 2014, ISSN: 2212-392X (Online) Bentham Science Publisher
142. Annamalai, A., V.L.P. Christina, V. Christina and P.T.V. Lakshmi, Green synthesis and characterization of Ag NPs using aqueous extract of Phyllanthus maderaspatensis L, , Journal of Experimental Nanoscience, 2014, 9: 2, 113-119. ISSN 1745-8080 (Print), 1745-8099 (Online)
143. Kasi Viswanath Kotapati., Bhagath Kumar Palaka., Anithamma Kandukuri., Ramachandra Reddy Pamuru , Response of antioxidative enzymes and lipoxygenase to drought stress in Finger millet leaves (Eleusine coracana (L.) Gaertn). International Journal of Plant, Animal and Environmental Sciences, , International Journal of Plant, Animal and Environmental Sciences. , 2014, Vol.4(3) 644-653
144. Muthu, K.; Panneerselvam, M.; Topno, N. S.; Jayaraman, M.; Ramadas, K., Structural perspective of ARHI mediated inhibition of STAT3 signaling: An insight into the inactive to active transition of ARHI and its interaction with STAT3 and importin�, , Cellular signalling, 2014, 27 (4), 739-755
145. Thirunavukarasou, A.; Govindarajalu, G.; Singh, P.; Bandi, V.; Muthu, K.; Baluchamy, S., Cullin 4A and 4B ubiquitin ligases interact with ?-tubulin and induce its polyubiquitination, Molecular & Cellular Proteomics, Molecular and cellular biochemistry , 2014, 401 (1-2), 219-228;
146. Chandrasekar, S.; Sharma Om, P.; Srinivasapriyan, V.; SureshKumar, M.; Ramanathan, C. R., Ethyl trans-12-(pyridin-4-yl)-9,10-ethano-anthracene-11-carboxyl-ate. Acta crystallographica, , Acta crystallographica. Section E, Structure reports online, 2014, 70 (Pt 5), o512;
147. Cheung, C.H.A.; Sarvagalla, S.; Lee, J.Y.C.; Huang, Y.C.; Mohane Selvaraj Coumar,, Aurora kinase inhibitor patents and agents in clinical testing: an update, , Expert opinion Therapeutic Patents, 2014, 24 (9), 1021-1038.
148. Banavath, H. N.; Sharma, O. P.; Kumar, M. S.; Baskaran, R., Identification of novel tyrosine kinase inhibitors for drug resistant T315I mutant BCR-ABL: a virtual screening and molecular dynamics simulations study, , Scientific reports , 2014, 4, 6948;
149. Shao, Y.; Wang, B.; Shi, D.; Miao, S.; Manivel, P.; Krishna, R.; Chen, Y.; Eric Shi, Y, Synuclein gamma protects HER2 and renders resistance to Hsp90 disruption, , Molecular oncology, 2014, 8 (8), 1521-31
150. Devi, R.V.; Sathya, S.S.; Coumar, M.S, GAMOL: Genetic algorithm based de novo molecule generator, , Conf. on Adv. in Comp., Comm., and Inf. Sci, 2014, (ACCIS-14) (259–265)



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