- Efficient Penalized Generalized Linear Mixed Models for Variable Selection and Genetic Risk Prediction in High-Dimensional Data
- The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell data
- GMWI-webtool: a user-friendly browser application for assessing health through metagenomic gut microbiome profiling
- TIVAN-indel: A computational framework for annotating and predicting noncoding regulatory small insertions and deletions
- Potent Antibiotic Design via Guided Search from Antibacterial Activity Evaluations
- MFR-DTA: A Multi-Functional and Robust Model for Predicting Drug-Target Binding Affinity and Region
- MS1Connect: a mass spectrometry run similarity measure
- How to optimally sample a sequence for rapid analysis
- BLTSA: pseudotime prediction for single cells by branched local tangent space alignment
- Binding Peptide Generation for MHC Class I Proteins with Deep Reinforcement Learning
- AFTGAN: Prediction of multi-type PPI based on attention free transformer and graph attention network
- NetProphet 3: A Machine-learning framework for transcription factor network mapping and multi-omics integration
- CONTRABASS: Exploiting flux constraints in genome-scale models for the detection of vulnerabilities
- Phosformer: An explainable Transformer model for protein kinase-specific phosphorylation predictions
- Differential co-expression network analysis with DCoNA reveals isomiR targeting aberrations in prostate cancer
- Accurately modeling biased random walks on weighted networks using node2vec+
- CAPLA: improved prediction of protein-ligand binding affinity by a deep learning approach based on a cross-attention mechanism
- Gos: a declarative library for interactive genomics visualization in Python
- Cistrome Explorer: An Interactive Visual Analysis Tool for Large-Scale Epigenomic Data
- Global stabilizing control of large-scale biomolecular regulatory networks