- Network analysis of synonymous codon usage
- PRANC: ML species tree estimation from the ranked gene trees under coalescence
- mirPLS: a partial linear structure identifier method for cancer subtyping using MicroRNAs
- GPress: a framework for querying General Feature Format (GFF) files and expression files in a compressed form
- Analysis of endothelial-to-haematopoietic transition at the single cell level identifies cell cycle regulation as a driver of differentiation
- Analysis of endothelial-to-haematopoietic transition at the single cell level identifies cell cycle regulation as a driver of differentiation
- Identification of cell type-specific methylation signals in bulk whole genome bisulfite sequencing data
- Identification of cell type-specific methylation signals in bulk whole genome bisulfite sequencing data
- RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads
- Loqusdb: added value of an observations database of local genomic variation
- Chromatin 3D structure reconstruction with consideration of adjacency relationship among genomic loci
- Simulating ComBat: how batch correction can lead to the systematic introduction of false positive results in DNA methylation microarray studies
- Computational inference of cancer-specific vulnerabilities in clinical samples
- Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs
- Robust principal component analysis for accurate outlier sample detection in RNA-Seq data
- Methylation data imputation performances under different representations and missingness patterns
- NASQAR: a web-based platform for high-throughput sequencing data analysis and visualization
- Computational inference of cancer-specific vulnerabilities in clinical samples
- Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs
- Gaussian Mixture Model-Based Unsupervised Nucleotide Modification Number Detection Using Nanopore Sequencing Readouts
Whats new in Bioinformatics
Genome Biology
- Analysis of endothelial-to-haematopoietic transition at the single cell level identifies cell cycle regulation as a driver of differentiation
- Identification of cell type-specific methylation signals in bulk whole genome bisulfite sequencing data
- Computational inference of cancer-specific vulnerabilities in clinical samples
- Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs
- Sustainable agriculture in the era of omics: knowledge-driven crop breeding
- Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer
- Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients
- Enhanced Integrated Gradients: improving interpretability of deep learning models using splicing codes as a case study
- instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder
- The two languages of science