- RIscoper: a tool for RNA-RNA interaction extraction from the literature
- SRG Extractor: A Skinny Reference Genome Approach for Reduced-Representation Sequencing
- SVIM: Structural Variant Identification using Mapped Long Reads
- Protein Fold Recognition based on Multi-view Modeling
- METACLUSTER - an R package for context-specific expression analysis of metabolic gene clusters
- DIABLO: an integrative approach for identifying key molecular drivers from multi-omic assays
- SMARTCyp 3.0: Enhanced cytochrome P450 site-of-metabolism prediction server
- Comparative analysis of differential gene expression analysis tools for single-cell RNA sequencing data
- PIXER: an automated particle-selection method based on segmentation using a deep neural network
- Automated cell segmentation in FIJI® using the DRAQ5 nuclear dye
- Benchmarking Time-Series Data Discretization on Inference Methods
- Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines, and tissue samples
- OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs
- queryMed: Semantic Web functions for linking pharmacological and medical knowledge to data
- AllerCatPro – Prediction of protein allergenicity potential from the protein sequence
- iGUIDE: an improved pipeline for analyzing CRISPR cleavage specificity
- Barcode identification for single cell genomics
- iGUIDE: an improved pipeline for analyzing CRISPR cleavage specificity
- Correction to: Applications and potential of genome editing in crop improvement
- MITK-ModelFit: A generic open-source framework for model fits and their exploration in medical imaging – design, implementation and application on the example of DCE-MRI
Whats new in Bioinformatics
Genome Biology
- iGUIDE: an improved pipeline for analyzing CRISPR cleavage specificity
- Correction to: Applications and potential of genome editing in crop improvement
- Exosomal miR-196a derived from cancer-associated fibroblasts confers cisplatin resistance in head and neck cancer through targeting CDKN1B and ING5
- Correction to: RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs
- Accurate prediction of cell type-specific transcription factor binding
- Evolutionary genomics: the fruits of genomic approaches applied to evolutionary biology
- An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
- Systematic evaluation of C. elegans lincRNAs with CRISPR knockout mutants
- GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes
- Keen on the tenure track job, are you? Know these things, you should