- SPECS: a non-parametric method to identify tissue-specific molecular features for unbalanced sample groups
- Analyses on clustering of the conserved residues at protein-RNA interfaces and its application in binding site identification
- SPsimSeq: semi-parametric simulation of bulk and single cell RNA sequencing data
- SSIF: Subsumption-based Sub-term Inference Framework to Audit Gene Ontology
- Michelanglo: sculpting protein views on web pages without coding
- A willow sex chromosome reveals convergent evolution of complex palindromic repeats
- Mutational signatures: experimental design and analytical framework
- A willow sex chromosome reveals convergent evolution of complex palindromic repeats
- Mutational signatures: experimental design and analytical framework
- ARGminer: A web platform for crowdsourcing based curation of antibiotic resistance genes
- A Unified ILP Framework for Core Ancestral Genome Reconstruction Problems
- GeneSwitches: Ordering gene-expression and functional events in single-cell experiments
- iSeqQC: a tool for expression-based quality control in RNA sequencing
- ZIAQ: A quantile regression method for differential expression analysis of single-cell RNA-seq data
- scBatch: Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
- BionoiNet: Ligand-binding site classification with off-the-shelf deep neural network
- Methplotlib: analysis of modified nucleotides from nanopore sequencing
- About the need to make computational models of biological macromolecules available and discoverable
- SurfaceGenie: a web-based application for prioritizing cell-type specific marker candidates
- GsmPlot: a web server to visualize epigenome data in NCBI
Whats new in Bioinformatics
Genome Biology
- A willow sex chromosome reveals convergent evolution of complex palindromic repeats
- Mutational signatures: experimental design and analytical framework
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
- Genotyping structural variants in pangenome graphs using the vg toolkit
- Assembly of hundreds of novel bacterial genomes from the chicken caecum
- A post-transcriptional program of chemoresistance by AU-rich elements and TTP in quiescent leukemic cells
- Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data
- Opportunities and challenges in long-read sequencing data analysis
- Admixture-enabled selection for rapid adaptive evolution in the Americas
- Publisher Correction: Co-opted transposons help perpetuate conserved higher-order chromosomal structures