- ASTRAL-MP: scaling ASTRAL to very large datasets using randomization and parallelization
- SPRINT-Gly: Predicting N- and O-linked glycosylation sites of human and mouse proteins by using sequence and predicted structural properties
- Simulation assisted machine learning
- Dissecting differential signals in high-throughput data from complex tissues
- CliqueMS: A computational tool for annotating in-source metabolite ions from LC-MS untargeted metabolomics data based on a coelution similarity network
- TISIDB: an integrated repository portal for tumor-immune system interactions
- IsoCor: isotope correction for high-resolution MS labeling experiments
- SArKS: de novo discovery of gene expression regulatory motif sites and domains by suffix array kernel smoothing
- BrAPI - an Application Programming Interface for Plant Breeding Applications
- PedigreeNet: A Web-based Pedigree Viewer for Biological Databases
- Differential proteostatic regulation of insoluble and abundant proteins
- ngsLD: evaluating linkage disequilibrium using genotype likelihoods
- CytoBackBone: an Algorithm for Merging of Phenotypic Information from Different Cytometric Profiles
- Enhanced Waddington Landscape Model with Cell-Cell Communication Can Explain Molecular Mechanisms of Self-Organization
- ORE Identifies Extreme Expression Effects Enriched for Rare Variants
- EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
- EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
- Interactive roles of chromatin regulation and circadian clock function in plants
- Interactive roles of chromatin regulation and circadian clock function in plants
- Melissa: Bayesian clustering and imputation of single-cell methylomes
Whats new in Bioinformatics
Genome Biology
- EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
- Interactive roles of chromatin regulation and circadian clock function in plants
- Melissa: Bayesian clustering and imputation of single-cell methylomes
- TAD fusion score: discovery and ranking the contribution of deletions to genome structure
- PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
- Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads
- Measuring the reproducibility and quality of Hi-C data
- Exploring human host–microbiome interactions in health and disease—how to not get lost in translation
- RnBeads 2.0: comprehensive analysis of DNA methylation data
- Analysis of error profiles in deep next-generation sequencing data