- Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis
- Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph
- Bifrost: highly parallel construction and indexing of colored and compacted de Bruijn graphs
- Ultrasensitive deletion detection links mitochondrial DNA replication, disease, and aging
- PAWER: protein array web exploreR
- A learning-based method for drug-target interaction prediction based on feature representation learning and deep neural network
- Multi-omics profiling reveals microRNA-mediated insulin signaling networks
- NEDD: a network embedding based method for predicting drug-disease associations
- Prediction of hot spots in protein–DNA binding interfaces based on supervised isometric feature mapping and extreme gradient boosting
- The qBED track: a novel genome browser visualization for point processes
- Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis
- Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph
- Bifrost: highly parallel construction and indexing of colored and compacted de Bruijn graphs
- Ultrasensitive deletion detection links mitochondrial DNA replication, disease, and aging
- MEIRLOP: improving score-based motif enrichment by incorporating sequence bias covariates
- Correction to: FastMM: an efficient toolbox for personalized constraint-based metabolic modeling
- BITS2019: the sixteenth annual meeting of the Italian society of bioinformatics
- A preliminary PET radiomics study of brain metastases using a fully automatic segmentation method
- An improvement of ComiR algorithm for microRNA target prediction by exploiting coding region sequences of mRNAs
- Gene Circuit Explorer (GeneEx): an interactive web-app for visualizing, simulating and analyzing gene regulatory circuits
Whats new in Bioinformatics
Genome Biology
- Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis
- Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph
- Bifrost: highly parallel construction and indexing of colored and compacted de Bruijn graphs
- Ultrasensitive deletion detection links mitochondrial DNA replication, disease, and aging
- Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation
- AuthentiCT: a model of ancient DNA damage to estimate the proportion of present-day DNA contamination
- Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies
- Primo: integration of multiple GWAS and omics QTL summary statistics for elucidation of molecular mechanisms of trait-associated SNPs and detection of pleiotropy in complex traits
- sn-spMF: matrix factorization informs tissue-specific genetic regulation of gene expression
- A vast resource of allelic expression data spanning human tissues